PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF485 (357 amino acids)

SeqID: GFF485 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135560: L-threonine 3-dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF485
MAMMKAAVFVEPGRIELQDKPIPEIGPNDALLRITTTTICGTDVHILKGEYPVAAGLTIG
HEPVGVIEKLGSNVKGYQEGQRVIAGAICPSFTSYACQDGLPSQDGGCSCHGYKPMGGWR
FGNTIDGTQAEYVLVPDAQANLAPVPDGLTDEQVLMCPDIMSTGFAGAEAANIKIGDIVV
IFAQGPIGLCATAGAKLRGASTIIAVDGVDARLDIARKMGADVTLNFRNVDVVDEVLKLT
SGRGADASIEALGLQSTFESALRVLKPGGTLSSLGVYSSDLTIPLGAFHAGLGDNKIVTS
LCPGGKERMRRLLNVVASGRVDLGLLVTHKYALDNITDAYDLFANQRDGVLKVAIKP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory