PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5 (416 amino acids)

SeqID: GFF5 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1174676: Acetyl-CoA acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5
MLLSGHLRDYLPPVVTPFYLEKEMQGVVIVAATRTAIGSFQGALSDTSAVDLGATVIRSL
LSSTSLNPELVDNVVMGQVLSAGCGQNPARQSAIKAGLPFTTPAMTLNKLCGSGLESVNL
AAQAIQCKEADVVVAGGMESMSQSPYLLGKARSGLRMGHSQIEDSMLTDGLIDAFNHYHM
GVTAENLAEKYQITREQQDAFAVISQLKGSEAVASGRFKDEITPVEIPQRKGSPLKFDTD
EQPRGDVSSAGLSKLRPAFAKGGSVTAGNASSLNDGAAAVLLMSAEKATELGLTVLARIK
SYASAAVDPSIMGIGPVPATRKCLAKVNWSVGDLDLIEANEAFAAQCLSVGKELGWESEK
VNVNGGAIALGHPIGASGCRILVTLLYEMTRRDSKKGLATLCIGGGQGVAMALERD