PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5121 (646 amino acids)

SeqID: GFF5121 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 15600592: DgcB, Dimethylglycine catabolism[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5121
MLNTLLPILLFAALGLAVLGALRRVNMWRRGRASKVNLLGGLLAMPKRYMVDLHHVVARD
KYIANTHVATALGFVLSALLAILVHGFGLQNRILGYALLLASVLMFVGATFVYLRRRNPP
SRLSKGPWMRLPKSLMAFSVSFFLVTLPVAGILPVDFGGWLLAALLSVGVLWGVSEMFFG
MTWGGPMKHAFAGALHLAWHRRAERFGGGRSTGLKPLDLSDKSAPLGVEKPKDFTWNQLL
GFDACVQCGKCEAACPAFAAGQPLNPKKLIQDMVVGLAGGTDAKFAGSPYPGKPIGEHSG
NPHQPIVNGLVDAETLWSCTTCRACVEECPMMIEHVDAIVDMRRHLTLEKGATPNKGAEV
LENLIATDNPGGFAPGGRLNWAADLNLPLLSEKGSCDLLFWVGDGAFDMRNQRTLRAFVK
VLKAAQIDFAVLGLEERDSGDVARRLGDEATFQLLATRNIQTLAKYSFKRIVTCDPHSFH
VLKNEYGAFNGHYRVQHHSTFMAQLIDEGALNLGQHKGSSVTYHDPCYLGRYNGEYEAPR
QVLRALGIEVKEMQRSGFRSRCCGGGGGAPITDIPGKQRIPDMRMEDIRETGAELVAVGC
PQCTAMLEGVVEPRPLIKDIAELVADALLEEAPANVPSKREPAEVH