PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5160 (387 amino acids)

SeqID: GFF5160 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172458: Phosphoglycerate kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5160
MTVLKMTDLDLQGKRVLIREDLNVPVKDGVVASDARILASLPTIKLALEKGAAVMVCSHL
GRPTEGEFSAENSLKPVADYLSKALGRDVPLVADYLGGVDVKAGDIVLFENVRFNKGEKK
NSDELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELDALGKALGA
PAQPMAAIVAGSKVSTKLDVLNSLSQICNQLIVGGGIANTFLAAAGHPVGKSLYEPDLLD
TARAIAAKVSVPLPVDVVVAKEFAESAEATVKLIADVAADDMILDIGPQTAANFAELLKA
SQTILWNGPVGVFEFDQFGNGTKVLAKAIAESSAFSIAGGGDTLAAIDKYGVADQISYIS
TGGGAFLEFVEGKVLPAVEVLETRAKG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory