PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5184 (300 amino acids)

SeqID: GFF5184 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15600275: probable binding protein component of ABC transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5184
MKKILLTGCTLGLLLGAQAHANQAPLDGTLGKIASAKSITLGYRDASVPFSYVGDNSGKP
MGYSVELASKIVERIQQKTGVATLNVKYNLVTSQTRIPLVQNGTVDLECGSTGVTAERQK
QVAFSYGFIYVKGQLLTAKDSGIKGFPDLAGKNVVTTAGTTNERFLKSYNAEHKTNMFVI
SAKDHGEAFKMLETGRAAAFYMDDALLYGERAKAKDPHNWVVVGEEQSREIYSCMLRKDD
PQFLAVVNETLGDLYRSGEINGIYQRWFESPIPPKGLNLEFPMTRELKAIIAKPISDPVE