PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5312 (433 amino acids)

SeqID: GFF5312 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600397: N-acetylglutamate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5312
MPDYVNWLRHASPYINAHRDCTFVVMLPGDGVEHPNFGNIVHDLVLLHSLGVRLVLVHGS
RPQIEARLEARGLTPAYHEGLRITDAATLECVIDAVGQLRIAIEARLSMDMASSPMQGSR
LRVASGNLVTARPIGVLEGVDYHHTGEVRRVDRKGINRLLDERSIVLLSPLGYSPTGEIF
NLACEDVATRAAIDLGADKLLLFGADMGLIDENGRLVRELRPQQVPAHLQRLGSSNYQAE
LLDAAAEACRGGVGRSHIVSYAEDGALLTELFTRDGGGTLVAQEQFELVREAAIEDVGGL
LDLISPLEEQGILVRRSREVLEREIEQFSVVEREGMIIACAALYQIADSNAGELACLAVN
PEYRHGARGDVLLERIESRARAQGLKTLFVLTTRTAHWFRERGFEPSSVDRLPSARASLY
NYQRNSKIFEKAL