PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF593 (405 amino acids)

SeqID: GFF593 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF593
MAVGPGTLPEFYPVAGIKVGIASAGIKKPGRKDVVVFELAPESRVAGIFTKNQFCAAPVT
LSRRHLAETSPRYLLINTGNANAGTGEQGMRDAMACCQALAKQAGVTEAEILPFSTGVIG
EPLPVQKIVGALPEALANTAENRWTEAASGIMTTDTRPKGASCQVGLDGHTVTISGISKG
AGMIRPNMATMLGFIATDARIAPELLQTLASELGEKSFNRITIDGDTSTNDACMLMASGQ
YSGPEITASSAALPKLREALQAIYLELAHAIVRDGEGATKFVTIDVSGAAGQQEALDVAY
TVAHSPLVKTALFASDPNWGRILAAVGRAGVEGLDLNALEIYLGDVCLVRNGGRAEDYSE
ARGQAVMDREEITIAIDLKRGDVRETVWTCDFSHDYVTINAEYRT