PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF612 (597 amino acids)

SeqID: GFF612 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF612
MAGARALWRATGMKDGDFGKPIIAVANSFTQFVPGHVHLKDLGQLVCREIESAGGVAKEF
NTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADALVCISNCDKITPGMLMAAM
RLNIPTIFVSGGPMEAGKTKLSEHKLDLVDAMVIAADPNASDEQVEEYERNACPTCGSCS
GMFTANSMNCLTEAIGLALPGNGSLLATHADREQLFLKAGRQIVENARRYYEEDDASVLP
LSIASMAAFENAMVMDIAMGGSTNTILHLLAAAQEGGVPFTLNEIDQLSRRVPQLCKVAP
NSPKYHMEDVHRAGGIMGILGELERGGLINTDLPTVHSKTMREALETWDIMRSPPTEVVE
FYKAGPAGIPTQTAFSQSTRWPTLDGDRETGCIRSVENAYSSEGGLAVLYGNIALDGCVV
KTAGVDESIFVFEGKARVFESQDSAVAGILSDEVKPGEVVIIRYEGPRGGPGMQEMLYPT
SYLKSKGLGKDCALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLIENGDTIRIDIPNRSI
NVELDQHELDRRREARDAKGWKPELPRDRKVSAALKAYALLATSADKGAVRDLEKLD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory