PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF747 (366 amino acids)

SeqID: GFF747 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF747
MGPFPHNAPKSVISPENPAGTDGFEFVEFAHPDPQELRDLFARMGYELVARHKSKPGIEL
WQQGDITYVLNAEKGSFAERFVADHGPCAPSMGWRVVDAQKAFEHAVSKGAEAYEGDDKT
MDVPAIKGIGGSLIYFIDQYYDTSPYNTEFEWLTQSKPRGVGFYYLDHLTHNVFKGNMDK
WFRFYGELFNFKEIRFFDIEGKFTGLLSRALTSPCGRIRIPINEDRGETGQIVSYLKKYN
GEGIQHIAVGSEDIYGATDEISDRGIKFMPAPPASYYEMSHDRVIGHEEPLDRMQKHGIL
IDGEGVVDGGETKILLQIFSKTVIGPIFFEFIQRKGDDGFGEGNFKALFESIEREQIANG
ELAGAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory