PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF750 (430 amino acids)

SeqID: GFF750 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2500947: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF750
MSEAPSYGFDTLQIHAGAKPDPATGARQTPIYQTTAYVFRDADHAAALFNLQEVGFIYSR
LTNPTVAVLQERIATLEGGVGAVCCSSGHAAQIMALFPLMGPGCNVVASTRLYGGTVTQF
SQTIKRFGWSAKFVDFDNPEAVAAAIDDDTRAVFGESVANPGGYVTDIRSIADVADAAGV
PLIIDNTSATPYLCSPIAHGATLVVHSTTKYLTGNGTVTGGVIVDSGKFDWSANDKFPSL
SQPEPAYHGLKFHETFGGLAFTFHGIAIGLRDLGMTMNPQAAHYTLMGVETLSLRMERHC
ENAKTVASWLEQDPRVDYVTYAGLPSSPYHARAKEHYPKGTGGLFTFAVKGGYDACVKLV
NSLEIFSHVANLGDTRSLIIHSASTTHRQLTPEQQEAAGAGANVVRVSIGIENADDLIAD
LDQALSKASS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory