PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF765 (398 amino acids)

SeqID: GFF765 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230956: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF765
MHFGQIPRVPGDPILGLMDLYRADPNPAKLDLGVGVYKDAQGLTPIPRAVKLAEQRLVDG
EQSKSYIGGHGDAQFGALLLRQALGSRAIALGEQRAGCTQAPGGTGALRLAGEFIAKCLP
GRSIWLSDPTWPIHETLFAAAGLRVQHYPYVGADNRLDVEGMLAALQQVPPGDVVLLHAC
CHNPTGFDLNHDDWLRVLEVVRARELLPLFDFAYQGFGDGLEEDAWAVRLFAETLPEMLI
TTSCSKNFGLYRERTGALIAVTSDAERLLDVRSQLASLARNLWSTPPAHGAAVVATILAD
EPLRQIWQGEVERMRRRIASLRQGLVEALMPYGLAERFAHIAQQRGMFSYTGLTAEQVRR
LRAEDSVYLVESGRANVAGLDAERLDALAKAIARVVSN