PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF780 (325 amino acids)

SeqID: GFF780 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11128402: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF780
MKMTLTRRALMAVTAATLAFAAPVSADEMVDSIHFLIPGGAGGGWDGTARGTGEALTKAG
LVGNASFENMSGGGGGKAIGYLIENAESNHGTLMVNSTPIVIRSLTGVFPHNFRDLTMVA
GTIGDYAAIVVGKDSPINSMSDLIAAYQADPRKTAIGGGSVPGGMDHLVAAMVMKAAGEE
PTAVKYIPYDAGGVAMAALLSGEIAALSTGFSEAIDLANAGEVKIIGVTAEDRVPAYADA
PTMKEQGIDATFVNWRGFFGAPGLPQEKVDAYRAALAKMYDTPEWEEVRARNGWVNIHNS
GDDFVSFLEGQEEVIKSLMQELGFL