PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF849 (395 amino acids)

SeqID: GFF849 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141513: Maltose-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF849
MNKKFWCIATVGLAATFSLPLPALAAIEEGKLVVWINGDKGYKGLAEVGKKFTAETGIPV
EVAHPDSATDKFQQAAATGNGPDIFIWAHDRIGEWAKSGLLTPVTPSADTKSGIADFSWQ
AVTYDNKLWGYPISVETIGLIYNKALVDTPPKTFDDVMALNEKLAAQGKRAILWDYNNTY
FTWPLLSAKGGYVFEHADGGYDVKSTGVNNAGAKAGAQVLRDLIDKGVMPKGADYSVAEA
AFNKGDSAMMISGPWAWSNIEKSGIDFGVAPIPAIDGEPGKPFVGVAAALLNAASPNKDL
AVEFLENYLLQVEGLKTVNADVPLGAVANTAYMEELSANPHIKATFENAQMGEPMPNVPE
MGAFWSSMAAALTNITSGRQDVDAALDDAAKRITR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory