PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF860 (476 amino acids)

SeqID: GFF860 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3916042: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF860
MSSATEPSFRQSVDLMFNRAVSLMDLPPGLEEKIRVCNATYTVRFGVRLRGGIQTFTGYR
SVHSEHMEPVKGGIRYAMGVNQDEVEALAALMTYKCALVEAPFGGSKGGLCIDPRQYEEH
ELELITRRFAYELAKRDLINPSQNVPAPDMGTGEREMAWIADQYARMNTTDINAKACVTG
KPLNAGGIAGRVEATGRGVQYALREFFRNPEDVAAANMDGKLDGKRVIVQGLGNVGYHAA
KFLMSEDGAKITAVIERDGGLIDENGLDIEAVFQWIANNGGVTGYPDARYVENGALLLEE
DCDILIPAALEGVINLTNAANIKARLIIEAANGPVTAGADEILRDKGTVIIPDMYANAGG
VTVSYFEWVKNLSHIRFGRMQRRQEEARHQLVVDELEALSESLGKTWTLNPKFTERYLRG
ADELELVRSGLDDTMRTAYQSMREVWHGRNDVTDLRTAAYLVSIDKVAKSYRAKGL