PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF878 (460 amino acids)

SeqID: GFF878 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1176075: Hypothetical sodium-dependent transporter HI1690]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF878
MSESTQPHQQANNLWSSRMAFILAAAGSAVGLGNIWKFPYITGENGGGAFVLIYLACIFL
IGVPVLIAETMIGRRGGQSPVATMRTLTKTEGTARGWRAIGWNGVIASFLVLSFYAVIGG
WALVYIGKAATGLFTGADAEAIGGQFGGLLANPWELLMWHSVFMVIVVFIVGRGIRSGLE
KAVNMLMPLLFVLLVAMVIYAMNSGSFGRAVSFMFSPDFSKLTTAGVLTALGHAAFTLSI
GIGVLMAYGSYLPKTVNIARTAMTIAVVDTSVALLAGLAIFPLVFANGLEPGAGPGLIFV
TLPLAFGQMSGGALFGTIFFALLLVAAITSAISMLEPVVEWLEEHKGVSRAKSAIGGGLA
IWFIGIGTVLSFNVWESVHPLGFIPFFEGKTVFDLLDFLVSNLMMPLGGLAIALFAGWAM
KRESLPADIGLQGSSYKAFMFVLRYLTPAGIAVVFLYNLL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory