PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF922 (950 amino acids)

SeqID: GFF922 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF922
MNAAAQLERAPLPAEFLREVERVIPVERRFDDPLSTLAFGTDASFYRLIPKLVVRVESEA
EVIALLKLAHAENVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIRNGGEQIRLQPGV
IGANANAVLAPFQRKIGPDPASINAAKIGGIVANNSSGMCCGTAQNTYKTLAGLRVVLAD
GTVVDSEDAASVDAFRQSHAALLEQLAELGRETRANSELAAKIRHKYRLKNTTGFSLNAL
VDYDEPLDILNHLMVGSEGTLGFISAVTYDTVPDHPHKASALVVFPDVETCCLAVPVLKQ
QPVSAVELLDRRSLRSVEHKVGMPEWVKELSPTACALLIESRAASQSLLHEQINLIMTSI
AHFPVEKQVDFSEDPVIYNQLWKIRKDTFPAVGAVRQTGTTVIIEDVTFPVERLAEGVNR
LIELLDKHRYDEAILFGHALEGNLHFVFTQGFDDPAQVARYEAFMGEVAQLVAVEFGGAL
KAEHGTGRNMAPFVELEWGSEAYALMWKIKRLLDPTGILNPDVVLSEDPDIHLKNLKPMP
AADEIVDKCIECGFCEPVCPSNGLTLTPRQRIVIWRDIQARKRAGVDTTEIERLYHYHGI
ETCAATGLCAQRCPVGINTGDLIRKLRGREASKTGAANWLADHFATAVQGTRFMLHAANG
AHIILGTKRLAKLSATMTNASKGRVPQWTPATPQPLQRLHLPKPTAQDERPRVVYLAACV
SRAMAPAARDQEQEPLLDKTRSLLEKAGYQVIFPEQLNDLCCGQPFASKGYAEQGERKRQ
EMLDALLKASRGGLDPIYCDTSPCTLRLVQGLTDQRLDLYDPVRFIRTYLLDKLDFVPQE
KAIAVHVTCSTQHLGEAQALIDIARRCAKEVVVPEGIHCCGFAGDKGFTTPELNCHALRS
LKDAVQICDEGISTSRTCEIGLSRHGEIDYHGLVYLVDRVTRSKTATPTL