PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF926 (1188 amino acids)

SeqID: GFF926 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600629: probable biotin carboxylase subunit of a transcarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF926
MRILPISGLRSALSRWPYPELRLYRTLICAYHFAKLHDPEDAMTDFKKILIANRGEIAIR
VMRAANEMGKKTVAVYAEEDKLGLHRFKADEAYRIGEGMGPVAAYLSIDEIIRVAKECGA
DAIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAIDADVPVIPATE
VLGNDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNG
EGYLEKMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRTEI
CDLGRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNPRVQVEHTVTEEVTGIDIVQAQIL
IAEGKTIAEATGKASQDEIQLNGHALQTRVTTEDPLNNFIPDYGRITAYRSATGMGIRLD
GGTAYAGGVITRYYDSLLTKVTAKAPTPEKAIARMDRALREFRVRGVSTNIAFVENLLKH
PTFLSNEYTTKFIDETPELFQFAKRRDRGTKVLTYIADISVNGHPETEGRAAPHTDLKEP
RAPKADAATQPYGTRNLLEQKGAQAVADWMKAQRQLLLTDTTMRDGHQSLLATRMRSHDM
IKVAPAYAQNLSQLFSVECWGGATFDVAYRFLQECPWQRLRDLRERMPNLMTQMLLRASN
GVGYTNYPDNVVQSFVKQAATGVDVFRVFDSLNWVENMRVAMDAVVESGKICEGTICYTG
DILDPNRAKYDLKYYVGMAKELEAAGAHILGLKDMAGLLKPAAARQLVKALKEEVGLPVH
FHTHDTSGVAGATILAAADAGVDAVDAAMDAFSGGTSQPCLGSIVEALRNTDRDTGIDIA
AVREISGYWEQVRAHYVAFESGLAAPASEVYLHEMPGGQFTNLKAQARSLGLEEKWSDVA
QTYADVNQMFGDIVKVTPSSKVVGDMALMMVSQGLTRDDVEDPKSDVAFPDSVVDMMRGN
LGQPPGGFPEAIVSKVLKGDAPNLERPGAHLAPVDLEATRAELSKELEGKDVDDEDLNGY
LMYPKVFLDYMGRHRTYGPVRSLPTRTFFYGMEPGEEITAEIDPGKTLEIRLQAIGDTDD
KGEVKVFFELNGQPRVIRVPNRLVKATTQANPKAEQGNPNHIGAPMPGVVASVAVQVGQP
VHEGDMLLTIEAMKMETGIHAERDAVVKAVHVQPGGQIDAKDLLIELE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory