PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF944 (549 amino acids)

SeqID: GFF944 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF944
MSLPEYTDVYNNFDPAALEADILDGRLDSGLNVCHEICDKWADDPSRVALYYETEDGGDG
TLTFAELKEASARFANYLKSQGIGKGDRVAALLPRTPELLIVIAGTLRAGAVYQPLFTAF
GSGAIEYRFERASTKLVVTNPENYPKLNDVKVCPPVVGVNASEIGADIPDFEETLAAQSS
DFEPVMIKGDDPFLQMFTSGTVGKSKGVAVPAKALLAFYVYMKYAIDLQDGDRFWNVADP
GWAYGLYYAVVGPLLMGHATHFNPGGFTPESTYDMIRKYKITNLAAAPTAYRLLKANDHV
LPEGENLGLRVASSAGEPLNPEVVNWIRNRHYCPVKDHYGQTETGMTCCNFHGLAHPVRE
GSMGYASPGHKVVALNEKNEVVGEGEVGQLAVDVKASPLFHFDGYTWGEKDPFVNGYYLT
GDMVINHGNGNFSFSGRDDDIITTAGYRVGPADVESTLLEHAAVAESGVVGKPDEKRGSI
IKAYVVIKGDYALGDEQALKDELQELVRRRLSTHAFPREIEFVDELPKTPSGKIQRFVLR
NQAKEEIGA