PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF946 (251 amino acids)

SeqID: GFF946 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 6226667: Bifunctional PGK/TIM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF946
MRRPMVAGNWKMNGTRASVAELVESLRMQALPVSVEIAVFPSCLHVAQVLGGVDSKHVAV
GAQDCAAQNGFGALTGEVSAEQFAEVGCEWVLVGHSERRLVLGETDEVVSRKFLAAQVGG
LKPVLCLGETLEEREAGRTLEVVGRQLAQVLDDHGIAVFESAVIAYEPVWAIGSGLTATP
EQAQEVHAAIREQLSRQDRQVAAGVRLLYGGSVKADNAAELFSMADIDGGLVGGASLKAN
EFGAICRAAGN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory