PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF963 (454 amino acids)

SeqID: GFF963 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF963
MASGSSSADSFLQAHPELQFVDLLIPDMNGIVRGKRVDPSALAKVFERGVAMPASIFALN
IQGTTVEETGLGLDIGEADRVCLPIENTLTMEPWQKRPTAQLLLTMYELDRETPFFADPR
VVLQNIIKRFEDLGLTPVAAFELEFYLIDQENLAGRPQPPKSPLSGKRPAGTQAYSIDDL
DEYAEFLADVLDAAHEQELPADALVAESAPGQFEVNLHYVDDAVQACDHATLLKRLIKNM
AYDHEMDTTFMAKPYHNQAGSGMHLHVSLVDGEGRNVFAGDAEQPNDMLRWAVGGLVATM
NDAMALFCPNINSYRRFSPEYYVPSAATWGVDNRTASLRLPGGDPEALRIEHRVAGADAN
PYLLMAAVLAGIHYGISNRIEPPPVTVGNAHEQHEASLVNNLRDALRELGQSKVMADYLG
SQFLDVFVACKEHELNEFEMTISDLEYLWYLHTV