PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF971 (421 amino acids)

SeqID: GFF971 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3025140: Inner membrane transport protein yeaN]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF971
MNLDAPRTPELEQLLIDAEADDDEVQHSPPPVSRPWLLLLGLVLVALNLRPALSSLSPLL
SEVSSSLGLSAARAGLLTTLPVLCLGLFAPLAPILARRFGAERVVLGILLMLAGGIVLRS
AFGEVGLFVGSLIAGASIGIIGVLLPGIVKRDFAKQAGTMTGVYTMALCLGAALAAGASV
PLSDYFGHRWSIGLGFWMLPALLAALCWLPQIGHKHGAHRVAYRVKGLLRDPLAWQVTLY
MGLQSSLAYIVFGWVPSILIDRGLSATDAGLALSGSIIVQLLSALTAPWLATRGKDQRLA
IVVVMLLTLGGLMGCLYAPLDGLWGWAILLGLGQGGTFSLALTLIVLRSRDAHVAANLSG
MAQGIGYTLASLGPLAVGLIHDWTGGWAATGWVFAVIGLGAIVAGLGAGRAKYVGVCSEK
V