PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF977 (746 amino acids)

SeqID: GFF977 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF977
MASLKKIARRSFLIGSAAIAGGVAFGTYKYHQPAPNPLAQEDGRAVLNPFVFVDQSGVTL
IAPRAEMGQGVKSAWASLIAEELDVDPAKVTVLHGPAAKAYYNSAMMSEALPGRGYDGSA
LQHSLGEIVGHMAKFLDLQVTGGSSSMRDGFERMRHAGASARETLKQAAADQLGISRDQL
TTEDGHVVAPDGTRLPYSALANAAASLAPIEADLRPASEWRLIGKDVPRIDMVAKSTGTA
EFGVDVRLPGMKFAAIRQNPHFGVGKTAFDASAAEGMAGVEKIIDLGDAVAVVASNTWLA
QQAVDAIDVTWEAAPYPETTEAIFEEIARSFDAAPNSTMRDDGDVDALPDGATVIEAEYR
LPYLAHATMEPMNATALYSGDGLQIWAPNQGPTVVQKKAAALAGLDVDAVEVNTTYLGGG
FGRRIETDYTDRAVQIAIQLQGTPVQLTWSREEDISHDVYRPGAIARYRAAIKDGKAVMV
HGKIAAQSTTVEGAGRMLGLPMSGPDKGHVDAAFNQPLAIPNFRVEGYLAKPMLPVGFWR
SVGASFNGFFSDCIIDEMAHAAGRDPLDFRLELARAEWEPAAKVLETVRDMSGWTGKTPD
GIGRGVAMAYSFGTPVAQVIEVADEDGQIRMTNAWIAADLGRVIDPKNTRAQMFGGMVYG
LSAACFGEITIDGGAVEQENFPDYDALRMHTMPTVQVELLENQPRMGGAGEPGTPPAAPA
LANALFDLTGKRARQLPLMHEFDLLI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory