PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0066 (339 amino acids)

SeqID: Ga0059261_0066 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131632: ketol-acid reductoisomerase, NAD(P)-binding [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0066
MRVYYDRDADLNLITGKKIAIVGYGSQGHAHAQNLRDSGVKEVAIALREGSATAKKAEAA
GFKVLSNKEAAQWADVLMILAPDEHQAAIWENDLKGNMKPGSAIAFAHGLNIHFGLIEAP
ADIDVIMIAPKGPGHTVRSEYVRGGGVPCLIAVHQDASGNAHDVALAYASGVGGGRSGII
ETNFREECETDLFGEQAVLCGGATALVQAGFETLVEAGYAPEMAYFECLHELKLIVDLMY
EGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVLDNRAGQP
ELKASRIAAKRHQIEQVGSELRAMMPWIGANKLVDKEKN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory