PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0325 (625 amino acids)

SeqID: Ga0059261_0325 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0325
MATAVHQVTPEEASANPPPEAVVVRFAGDSGDGMQLTGGQFTLSTALAGNDLATFPDFPA
EIRAPQGTLFGVSAFQINFGSAAIETAGDAPDVLVAMNPAALKTNVGDLKPGGLIIADEG
EFNKRNLDKAKYAENPLEDGSLAKWQLLKLNISQLTLDAVKPFGLGNKEALRCKNMWTLG
LALWMFDRERGPLIDWLKTKFAKAPELAEANIAALNAGHAYGETAELGAQGVGQLHVPAA
PVEPGLYRTVTGADSISLGLVAGAQLAGLKLFYGGYPITPASAILHHLARLKEFGVTTFQ
AEDEIAAVASALGASYAGSLGVTCSSGPGIALKTEAIGLAIMTELPLVIVNAQRGGPSTG
LPTKTEQSDLYQAVYGRNGDAPVPVIATRSAADCFDCAIEAVRIATQYMTPVMLLTDGYL
QNAAEPWKVPDMSGYKPFPVEFHTELPADGEKFLPYARDEKLKRPWVKPGTPGLLHRIGG
IEKALGTGNIDYAPDTHQAMTDIRKAKVEGIAVPDQEIEQGEAGGKLVVVGWGSTYGPIT
QAVRRARRKGLDVSHIHIRHIWPMPKNLGALLKGYEHILVPEMNTGQLKTVLRDQFLVDA
RPLNKVSGQPFRIHEIEAAIEEALA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory