PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0571 (793 amino acids)

SeqID: Ga0059261_0571 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 8134671: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0571
MTARLLSWPLAVLLLVLTSVAPAMAGTGAPVSSKTSPLPALPDTGDRIRLAGVDGQPVVL
DGRRAFRLSADKRRWEPLRADALADLGEIAAASDGNRTVLIAGRGGVAERIVRLTIANDG
LAVHPLAALPVPLHAAQAAIRDDSIWLAGLGPDGAARLYKASLSAPGRWAAQAAWPGGAA
PVALGAQNKGVFVTLADGAQWRWFSDKGWRVGARAPAAIVPGSTRAIGQAYLLYLGSGAD
GATRLYSYSAITDAWAALGAPQAGTPQAAVSYGEGLLAARSNANGLAFTTTELVSERQSL
ALLDWLIIGVYMFGMLGVGFYFYRGAKNGSSNEFFLGSRSIPAWAAGISMFAGSISSISY
LAIPAKAYETNWQYIMSKMSTIAGLIFVAIMIVPLFRRLNLVSVFNYLETRFHPSIRLLS
SALWMLMQIGGRMGIVLFLPAMAIGTITDTNIVACIVVVGIFTIIYTALGGMKAVVWTDV
FQVMVLTGGACFAIGFIIYQLGLMPVVETARAFEKTDMVNLSFDITQPTLWGFLILVLFD
VVLTFPKDQVLMQRVLATPSEKEASRSVWVFAVVLLPSAFMFYIIGTVLFAYYRENPAQL
NPMLPIDAVFPAFIGTELPAGVTGLIIAGLFAAAMGTLSGIINSVATLLSVDFYGKFRNP
TQEQTVRFAEWMSVVVGLIGIGIAIILSRMDIHSLLDLTIELFGLLGGSCAGAYTLGMFT
RRANWQGVAIGIVAASLLTLVVWIFGLIHPYWYLALAIMASIVIGYLASLLFPPPSHSLE
GLTIYDKARKQAA