PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0579 (495 amino acids)

SeqID: Ga0059261_0579 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 136182: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0579
MSVPQPSDLFGDLFTTVQECALFPDSKTFADAVPRRGPEAIMQDWKAQPPSGDAGLRAFV
DANFVLPTEADCDAPDGRPLREHITQLWPVLTREPETPAPGSSLLALPRRHVVPGGRFRE
LYYWDSYFTMLGLVRSDRQDLVEDMIAVFGSLLDGYGHIPNGTRSYYLSRSHPPVFYLMA
ALSQDRSANARAQRLSWMRAEHEFWMAGEKDLAPGGEHRRVVRLADGALLNRYWDDRAAP
RDESWREDIELAQRAPDRDAPELWRDIRAAAESGWDFSSRWLGDGQSLETIRTTRLLPID
LNALLFGLEQAIAEEAKALGDDTAATEFARRADARREAIDLHLWHPDAAFYADYDLDLGR
ASGRLTAALGFALFTGVASAQRAPDAANAIAGLLRAGGLLTTECVTGQQWDAPNGWAPLH
WVVIEGLRAYGQNALADTIAQRWLAMVASHYDATGQLLEKYDIEQCRAGGGGEYGTEIGF
GWTNGVTLALMQDLG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory