PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0835 (582 amino acids)

SeqID: Ga0059261_0835 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0835
VAAEPIIPLDPNWPKMTLGQAQALMTAPGQKFEMDEVEIRGVRTRVWKNAPPSLAWLIQA
SRMHGDRIFTIHEDERVSFEANFRAVARLATQLREMGVGKGDRVALAMRNLPEWPVVFFA
AVSIGAILVPLNAWWTSGELDYGLRDSGSVVLFTDGERYDRLADALPGLPDLKHIVVSRA
RGPLGEGVRQLEDLIGKPGDWAELPDAPLPAEPSLVPDDDATIFYTSGTTGHPKGALGTH
RNLITNILSSGYCGARPYLRRGEMPPDPTPRVGLMVIPLFHVTACSASLMGAVFAGHTTI
FMRKWDVEQAMEIIQREKVNLTGGVPTIAWQLLEHPARAKYDLSSLEMIAYGGAPSAPEL
VKRIYTEFGALPGNGWGMTETMATVTQHSAEDYLNRPTSAGPPVPVAELKIMDAEGEHEL
PIGEVGELWAKGPMIVKGYWNKPEETAESFRDGWVRTGDLARVDEEGFLFIVDRAKDIII
RGGENIYSSEVEDVLYAHPAVTDAALIGIPHRTLGEEPVAVVHLAPGKQASEAELQQWVR
DRLAAFKVPVAIRFTRDTLPRNANGKILKKDLKGLFAEEAAA