PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1159 (639 amino acids)

SeqID: Ga0059261_1159 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2498162: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1159
MRVLLLLVIATLGFVPAAAGAKTKTFDRYVEGKLSAPTPGQRSGGLLLMGGGDRNHDAMR
WFFAKAGNGHIVILRASYAGEIGKEFVKEIGGVASAETFVFHDRAAASDPRILAALRRAD
GIFLAGGDQANYVRYWKGTEVARLLTAHVAAGKPLAGTSAGLAMLGEALYGASDGGSIKS
PEALADPFGPANTIERDFLDIALLKGVVTDTHFKERDRLGRLFAFVAKAQLGRPSDSPAM
IGVGVDESAAVAVEADGRGRVYAIEPDGGAWIVDGSALRVAPSRGVLVADRIKVTVMNTA
SVLHLPSGRVDNPASVRRYAAAGGEISEMPRWSLAIHGGAGVIERGTLTPAKEAAYRAGL
AEALRAGGAVLDRGGPALDAVAAAVRILEDNPLFNAGRGAVFTAEGRNELDAAIMDGATQ
KAGAVAGVTRTRHPIDLARAVMDKTRHVMLARDGADRFSIEQGLEQVAPEWFRTEERWQQ
LQAWRNKQAGAVDRSHLFGTVGAVALDADGNLAAATSTGGMTGKRWGRVGDSPIIGAGTY
AKNGQCAVSATGSGEYFIRESAARQVCDRVAWNGETLANAAQATIMAVGSIGGDGGLIAM
GSNGKPAFAINDLGMYRGRIGPGSEPQTAIFADERFPER