PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1572 (480 amino acids)

SeqID: Ga0059261_1572 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595514: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1572
MTAQQKVIDAVRARFGPRAALTDADVIAPWLNDWRGRYHGAAAAILQPDSTEAVAAMVTL
AGQHGVALVPQGGNTSMVGGATPPADGSALILSLRRLNRVRRIDAAANLAEVEAGVILAD
LHDAALAQGRRFPLTLGAKGSATVGGLVSTNAGGTQVLRFGTMRGLVLGLEAVLADGSIH
GGLAALKKDNRGYDLNQLLIGAEGTLGVVTAASLKLVAAVHARAVAWIGLASPHAGLELL
QRLEAATDTIESFEIIPARSLGAVLRHIPGTRAPLSGDHGWHVLIEAVAVSAEQEAPAQL
IERLLGPALESGLAQDATIAANEAQAEAFWKLRESISEAERASGPALQHDISVPVAAMPD
FMIDGAKAVETRFPGVSAGAFGHLGDGNVHFHVRAPAGSAADWAKTHSDIISPFVHDLVV
AAGGSISAEHGIGQMKRDELARLSSPARMHALAAIKRAFDPRNLLNPGKLVFLAPERADQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory