PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1580 (541 amino acids)

SeqID: Ga0059261_1580 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1580
VSEAAPMPATETNRDWWRGAVIYQIYPRSFADSNGDGIGDLPGVAAHLDHVAALGADAIW
LSPFFTSPMRDFGYDIADYCGVDPVFGTLADFDAVIEKAHALGLKVIIDQVYSHTSDQHE
WFKESRSSRDNAKADWYVWADAKADGSPPTNWQSVFGGPAWTWDARRGQYYLHNFLSEQP
DLNLHNPQVQNAALAAARFWLDRGVDGFRVDAINFAMHDPEFRDNPPAPYTGTPRTRPFD
FQQHLYNQSHPDIVRFLERHRELTDSYGGRFTVAEVGGPTPEAEMHAFTQGQKRLNSAYG
FDFLYANKLTPALVKKAVETWPDTHGTGWPSWAFENHDAPRALSRWVDAEHRDAFAAMKM
LLLMCLRGNAILFQGEELGLTQVEIAYDQLQDPEAIANWPLTLSRDGVRTPMPWKADAEN
LGFTAGRPWLPLGPDHGALAVDRQIAQNGSLLNLTRGLIALRAANPALRAGAMEVLAADE
ALLVFTRIADGQALTCAFNLGKTPLAWHPAQPDRFRLLAAVNGAAPGSLPPYSGLVLEQI
A

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory