PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1623 (549 amino acids)

SeqID: Ga0059261_1623 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 8134671: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1623
VTSLSHIDLIVVIVYAIGIFALAQWVSREKAGHAKDTSDYFLASKSLPWWAIGASLIAAN
ISAEQIVGMSGSGYAIGLAIASYEWMAALTLLIVGKWFLPIFLKNEIYTMPQFLEQRFGP
TIRTVMAVFWLALYIFVNLTSILWLGSIAVTQVAGVDQDIALFGLGAFALVYQLRGGLKA
VALTDIVQVTLLVLGGLVISYLTLSKIGGDAGVMGGFTRLTTELPGKFDMILAPDNPFYK
DLPGLSVLIGGMWIANLSYWGFNQYIIQRALAAKSLSEAQKGVVFAAFLKLLMPVIIVLP
GIAAVILAPDLAKPDQAYPTMMRLLPVGLLGLVFAALVAAIIASTASKINSIATIFTLDL
YAKAKGVQSRAQDAATASASGDSGLTAAHEKQLVRVGRTTAVVATLLAIFTARPLLGSLD
QAFQYIQEFSGFVTPGITVIFLLGLFWPRATEAGALTGAVASVLLSFLFWFPADWGGIAT
LNAVPFMNRMMIVFFVSLALAVVVSLVRPAPADSNRITMQGVSFGTTTSFNVAGVIIIMI
LIALYATWW