PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1631 (403 amino acids)

SeqID: Ga0059261_1631 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1631
MPKIVSARVIVTSPGRNFVTLKVECDDGTTGIGDATLNGRELAVAAYLSDHVAPCLIGRD
AHRIEDIWQYLYKGAYWRRGPVTMTAIAAVDMALWDIKGKLAGMPVYQLLGGASREGCMV
YGHANGTSIEETIKAALDYQLQGYKAIRLQCGVPGMASTYGVSKDKYFYEPADAALPSEN
VWSTSKYLRIVPELFEAAREALGWDVHLLHDVHHRLTPIEAARLGKDLERYRPFWIEDAT
PAEDQESFRLIRQHTTTPIAVGEIFSSIWDCKALIENRLIDYIRATVLHAGGITHMRQIA
ALADLHQIRTGCHGATDLSPVTMAAALHLGLAIPNFGIQEYMRHTPETDAVFPHAYSFAD
GMLHPGEVPGLGVEIDETLAGTFPYDRAYLPVNRLEDGTMWSW