PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1646 (830 amino acids)

SeqID: Ga0059261_1646 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172700: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1646
MALIITSPLRGWAAPLDSVPDPVFAQRMMGDGVAIQPLADTVCAPFDGEVVTLHEAGHAV
SLRSDEGAEVLIHIGLDTVGLKGRGFTPLVAPGATVARGDPLIRFDMDAVALGATSLITP
VIVTNAEAFTITRRTMGRAIGAHEELMALAPARTQPRRWSDDGTVIEERVTLILPHGIHA
RPAARLGECARQFEAEIHLLHGDKRGDARSTVGLLALGTRLGDELVVQARGSDAEAALAA
IVALLGSDMGEGAPAHAPAIAVPAAPVLQPGQIGGVIASPGLAMGPAARLRQTAIAVERE
GKGVDAERTALDAARTEVRVRIGARADAAGGSVAAVMRAHLALLDDPELAAGAETRIAAG
NSAGYAWRGAVHDQIAALKATGNAHLIERTDDLVDIERQVLGVLTGIPAEADAIAAGAIL
VADDLLPSQLVSIAASKPAGICLVRGGPTSHVAILCAGMGLPALVAMGDAIEAIEDGTAL
LLDAEAGHVTPDPSQADADAFAARLAKREARRDAARAAAGNACQTADGVRIELFANLGTV
EDAKAAAAQGAEGSGLVRSEFLFLDREDAPSEDEQHAAYQGIADALPGKPVIVRLLDVGG
DKPAAYIPFDAEENPALGLRGIRVGLAHRDLLETQIRAILRVQPVGQCRIMLPMVASVSE
IRAVREVVERLRGEMGIETPIEVGVMVETPAAAITADLLAAEADFLSIGTNDLTQYVLAM
DRGNPAVASGVDAMHPAVLRMIAETCRRATAKGRWVGVCGGLASDPAAVPILIGLGATEL
STVPGFVPEAKAIVRSVTLADARDHAERALHCSSAAEVRALARAFEEKNA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory