PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2816 (259 amino acids)

SeqID: Ga0059261_2816 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 130017: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2816
MKLDSSISAIVTGGASGLGHATAKAIAETGAKVAIFDLNEELGEKVAAEIGGIFCKVDVL
SDESVDAAFEKARSANGQERVLVNCAGTGNSIKTAGVDKKTGEIKYFPSDKFAWVLMVNT
VGTFRCITRSAAGMLTLDPVDGERGAIVCTASAAAQDGQMGQAAYSASKAAVVGMTLPIA
RDLSGSAIRINTIMPGIFATPPMLGVPDNVRSVLEASVPFPKRFGAPAEYASLVLEMVRN
GYFNGETVRLDGAIRMPMR