PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2901 (562 amino acids)

SeqID: Ga0059261_2901 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404339: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2901
MRYSHIIIGGGSAGSVLASRLSERGANQVLLIEAGPDTPPGDEPAAILDSYPGSAYLDAR
FVWSNRRVTVAPTGNLQPGTMLPPRKYEQARVLGGGSAINGQLANRGLPWDFEDWVARGA
MGWGWDDVLPFFRKLENDLDFDGPLHGNTGPLPIRRIPEAFWPGQAKAFSAALTEAGLPF
LADQNGEFGDGHYPLPISNIDNHRVTAAMAWLTLQVRSRSNLQIRTNTTVEALLFDGLRA
IGVRAGGEVLLGKTIILSAGALMTPELLLRSGIGPADDLARVGVEVRLNAPGVGRGLTDH
PSIAIASYLPSAARLRRQRRHILLGVRFSTDTNRFPAGDMSGLISTKAAWHAVGERLGTL
AFWINRPLSEDGRIHLTSADPRQAAQVDFNLLSDSRDVERLMRGFRRMAALHLSPLLGNA
ALDAFPASYSEKVRQIGTINLKNRILTRLAALFLDGPAPIRRAFIENLVMEGESIADLLS
DDAKLEVFVRSAVAGVWHASCSCRMGAADDPMAVLTPDGRVKGIEGLRVSDASAFPAIPS
ANTNLAVLMLAEKLAEQMKAEN