PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2969 (479 amino acids)

SeqID: Ga0059261_2969 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2969
VRPLALDPDRLFPAEPTTRAIACDLYKEIAGLPIVSPHGHTDPSWFATDDAWENATELFL
APDHYVFRMLYSQGVDLDALRVPRIDGVPATDPRAAWRLFASNYHLFRGTPSRMWLDHVF
AEVFGIERLLDSGTADHYYDTINEALATPAYRPRALFERFKIDFLATTEGADDPLEHHAA
IRRSGWGGRVVTTYRPDSVIDVEHEAFKGALEAFAGLTGEDVHSWKGYLAAHRKRRADFR
IAGATATDHGFATAQTANLSTAESEALFGRIMSGKWDAADAELFRAQMLTEMAKMSVEDG
MTMQIHPGACRNHNAKLFHSHGRDKGADIPTRTDYVHALKPMLDVVGNEPGLTVILFTLD
ESTYARELAPLAGHYPCLRLGPSWWFHDSPEGMRRFREMTTETAGFYNTVGFNDDTRAFF
SIPARHDVARRVDCAFLARLVAEGRMQDWEAAELAYELTNGLVRKAYKLDQPLTAVKAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory