PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3276 (595 amino acids)

SeqID: Ga0059261_3276 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 33302625: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3276
MAEPASKPETSPTPRKLSSLRIVWRHTSRYPLQLGLAIVALILAAGATLWIPRTFKEVVD
KGFGADADPSRIGAYFQGLLLVVVVLAFATAMRFYFVSWLGERTVADLRAAVHRNLLRLP
PKWFEENRPSEIASRLTADTAVVEQIVGTTVSVALRNLLIAIGGTVYLFVLAPKIAAYLI
IGIPVIVLPIMWLGGRVRRFSRTSQDRVADIGAIASETLGAMRIVQAFGQERREGERFQT
AVDAGFATARKRFATRALMTALVIFALFTAITLIMWDAVYGVAEGRISGGSITAFVITAG
LVTGAFGALTEVYGDLLRASGAASRLAELLAQEPDIAAPANPVPLPVPPLGAIDFKNVTF
RYPTRPEVSALHQFTLSVAPGETVAVVGPSGAGKSTLFQLVQRFYDPEGGEIRVDGIPVR
SADPGEVRARMAMVPQETVIFAATARDNLRYGRWDATEEQIWQAAEAANAAEFLRELPQG
LETFLGEDGARLSGGQRQRLAIARALLRDAPILLLDEATSALDAESERLVQDALEHLMQG
RTTLVIAHRLATVRAAKRIIVMDEGRIVETGTHAELVAKGGLYAKLASLQFNDAP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory