PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3712 (428 amino acids)

SeqID: Ga0059261_3712 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3712
MSIDIKMPALSPTMEEGTLAKWLVKEGDTVKAGDLMAEIETDKATMEFEAVDEGVIAKIL
IAEGTDGVKVGTVIAVLAGEGEDVSAAAAAPKAEAPKAAEAPKEEAKAAPAAAPAPVAAP
AAASGDRVKASPLARRIAAEKGVELGSVSGSGPNGRIVKADVEGAKPGAAPAAAAPAAPA
AAPAAAAPAAPASVWYDESIPHEEEKLSNIRKTIARRLTEAKQTIPHIYLTVDVQLDALL
KLRGQLNKSLEARGVKLSVNDMLIKALAVALAQVPKCNVTYAGDKLVKYSRSDISVAVST
PTGLITPIIRDAANIGLASISTQMKELGQRAKEGKLQPHEYQGGTASISNMGMFGIKQFD
AVINPPQAMILAVGAGEKRPYIVDDALGVATVMSATGSFDHRAVDGADGAELMKVFKALV
ESPMGLLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory