PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3751 (518 amino acids)

SeqID: Ga0059261_3751 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3751
MRTDPEPNGTPITRRALLAAPAAFAASQALATSRPVVGTNSITAMDAVDLVTAIRRRVLS
AREVMTAHLEQIDTLNPRFNAIVSRVAPERLLKAAAACDADAAAGRFHGPLHGFPHAVKD
TAPAAGIPFTQGTPILRENVPTADSLVVSRMRNAGAIFIGKTNVPEFALGSHSFNPLFGV
TRNAWNPAVSAGGSSGGAAVALALRMVPLADGSDFGGSLRNPAGWNNVFGYRPSFGRVPS
VPSSDVFGQTFAVSGPMARRVRDVAFLLSVQAGPDSRSPFSLTEDPARFAGSLDREWKGR
RVGWLGDLQGALATEPGVLDTCEKALSAFRSIGMAVEAARLSLSAEEMWRTAVTLRHWSV
GADLIGHYSDPAKRRQMKPEAIWEVEGYLKLTGRQVAEASEGRARIYQAFRDLFDRYDFL
ILPTAQVFPFDVEQHWPRSIAGREMDSYHRWMEVTLPATMAGLPVLAAPAGFGGARRLPI
GIQIIGPNHADLAVLQVGHAYENASPWIAQALPGALRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory