PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3995 (418 amino acids)

SeqID: Ga0059261_3995 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3995
MPRVEINFDGLIGPSHNYAGLSPGNLAATRNSGAVSQPRAAALQGIAKMRANLALGLTQG
ILLPHARPDHRWLDSLATSYTDAAAHLQAQALSASSMWAANAATVSPAPDTADGRCHLTV
ANLVTMPHRSHEWPGTLAQLRLAFGNDAFRVHGPVPAPFGDEGAANHMRLCPEHDAPGVE
VFVYGVSGGPFPARQHREASEAVARRHGLDPARTLFVQQSEAAIAAGAFHNDVVAVANGR
VLFAHEQAFADKQGFYADLRRVMPEVEIVEVPASAVSLADAISSYLFNAQLVTLPSGETA
LVLPTEARDTPSVWAWLQAHVAGNGPIRHLEVVDVRQSMANGGGPACLRLRVVADPATID
PRFLVDPGKLDRIAALVEMHWPETIAQDEIGDPALIARIEAARAALLDLLGIVELIDS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory