PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00016 (763 amino acids)

SeqID: H281DRAFT_00016 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00016
MSNLKASPHLRGIPHRAIRIACESAVSVAALVSLSAGAPQAASGPPWMNTALAPEQRAAL
LVGAMALDQKAAQLHGQSGTIAEVPACGNSIRHIPGIPALSIPTFRITNGPVGIGAGDCV
PQDRATALPMSMALAASFDPTLARAYGDVLGREARMLGLHVVEAPGMNAVRVGQGGRNFE
YLSEDPVLAGVIAENEIRGAQATGVIAMAKHFILNEQEANRNTVSVVVDDRTLHEIYLLP
FGVSVRRGNVASVMCSYNRIGSTYACETPRALNAILRGELGFMGYVQSDFGATHSTAPAL
NAGLDLEMQSGIWFTPPNLNAALATGQLTMATVNQALTRRYTQMFKAGIFDRPVARTPLD
STTIQNDGTEARVIGEQSAVLLKNSGNLLPLSGAVKSITIVGHNTYVDDAIAGGSGSSRV
VPTYTVGPQQGITNVLRQLGSSATVKTLAAPNDGSMDAAVAAAAATADVAIVMAGVVTGE
GSDRPDLSLPKGQDKLIAAVANRNERTIVVLKDGDPVLMPWVDQVPAILETWYSGQEDGN
VVARLLFGLANPSGKLPVTYPRLATDTPTSMPDRYPGTSGSDPVVQYSEGLLVGYRWYDT
RQVKPLFAFGHGLSYTSFKISDVQVSPRGYTGNGPILVALTVENTGLREGAEVAQVYLGL
PPNLGEPTKRLIAFQKVLLKPGEKRALSMYIYPINGFHALSYWDNAAQSWKIAAGTYTVY
VGNASDNIVAQSTFTVNVAMRDTGDGDDNVSRDPAPFGWDWAR