PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00160 (761 amino acids)

SeqID: H281DRAFT_00160 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00160
MKFRFPVVIIDEDFRSENISGSGIRALAEAIEKEGAEVLGLTSYGDLTSFAQQSSRASCF
ILSIDDDELLPYVENVVVEGETPELAAAIVALRAFVTEVRRRNADIPIFLYGETRTSRHL
PNDILRELHGFIHMFEDTPEFVARHIIRETKVYLDSLAPPFFKELVQYADEGSYSWHCPG
HSGGVAFLKSPLGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFSAD
HVFFVTNGTSTSNKIVWHGTVAPGDIVLVDRNCHKSILHAITMTGAIPVFLTPTRNNFGI
IGPIPRSEFEPENIRRKIEANPFAREALAKNPDLKPRILTITQSTYDGVIYNVEMIKEML
GEWLDTLHFDEAWLPHAEFHEFYQDMHAIGAGRPRIGAMVFATHSTHKLLAGISQASQIV
VQDSKNSRFDKHRFNEAYLMHTSTSPQYAIIASCDVAAAMMEAPGGTALVEESIAEALDF
RRAMTKVDTEYGDDWFFKVWGPDQFADEGIGSREDWMLRPNDSWHGFGPLAEGFNMLDPI
KATIVTPGLDMDGGFGETGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSM
VTELQQFKDDYDNNQPLWRVLPDFVALHPTYERVGLRDLCQQIHSVYRANDIARLTTEMY
LSSMEPAMKPSDAFAKLAHREIDRVPIDELEGRVTSILLTPYPPGIPLLIPGERFNKTIV
NYLRFAREFNERFPGFHTDIHGLVGEMINGRIEYFVDCVRV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory