PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00300 (434 amino acids)

SeqID: H281DRAFT_00300 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00300
MLRRHRAAVRAASGVTQPSSYADAGSPSRRARTWSPMHSAGSIIKGFALMVSIVASPAFA
QDAGPAPADGVYDMLVGTYTGGKSEGLYVYRFDTKTGDATRVSVAQTVNPSYLVVSRDRR
FVYAVNELPGDNGPASQRGGISAFRFDAASGQLSFLNKVSADGNDPCYLSLSPDGKYLLT
ANYSVAADPGGSFAVFPVQADGQLGASVLTVHHEGGGPVKGRQDNSHVHSTVFSPDGRYL
FAQDLGADKLYSYRYTPDGSRGLFGPTDWRYTQEKPGTGPRHLVFGVDGKHAYLTSELAA
TVSIFNYDDGKLTQVQTVSLTEPGFKGAVGAAAIHLSPDGRFLYATNRGDANEIVIFSVD
PTNGHLKKIGHQSSLGKSPREFAIDPTGKWLIVGNQNSDTVYVFRRDPQSGLLEANPKRI
EIGSPVDFKLVSPS