PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00328 (575 amino acids)

SeqID: H281DRAFT_00328 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00328
MKARSISVLRPRALATSVAAVVSLSCATAAFADDYPAVTYDRLSAAQSDPGWLTYYRTYN
GQAHSPLKQIDTSNVKQLKQVWSYKFPADLQQGFEATPIVNGHYLFVTTPKDNVYAFDAA
SGKQLWKFEPKLGAESFKTACCDVINRGVALYGKNVYVAMLNGEVVALDAQTGSLAWRKT
MFEPGVGYAFSLAPLAIDGALVVGSAGGEYGARGFIAALNPDNGNVLWKRFTVPAAGEKG
ANTWPDGMQEHGGAPAWLTGTYDAASRTLYWGVGNPGPWLADLRPGDNLYSDSLLALDPK
TGDLKWHYQYTKHDTWDYDGVNTPVLANIKYQDKNYDAIIHADRNGYFHAIDRGTGKLIY
AKPFVKATSVTGYTADGVPVQDPSKYPKTGTTIETCPSFLGGKNWWSVSYDPDRQVAIVP
ALHACMSLSGKSVTYMEGLPYLGEGFEIKPEPGSKGYGELQAIDVTTGKKMWSYWSKLPW
NGGVATTASGLAFSGSLDGHLYAFDSSTGKVLWKSPKLASGIVAQPSVFEVDGKEYVAIL
AGYGGANPIWGGPMAKAAEKIPRGGTLYVFALNHG