PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00356 (621 amino acids)

SeqID: H281DRAFT_00356 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00356
MTTNLNVASQVCPVPTLPGEPMSGADIILRVLAEQGVDTLFGYSGGAILPTYDAVFRFNE
SHAARPERQIKFVVPANEQAAGFMAAGYARASGKVGVFMVTSGPGATNAVTPIADCNGDS
IPVVLICGQVPRAAIGSDAFQEAPVFNIMSACAKQVFLVTDPAKLEQTLRTAFEIARTGR
PGPVVVDVPKDIQNWVGQYQGQGTLHFRGYSDRLQLVANGSRLDEQKGAQFFDLLRQSER
PLLYVGGGVIAAGATAELRQFAERYEIPVVTTLMGLGAIPAQHPLSLGMLGMHGAACANY
AVEDCDFLIAVGARFDDRVAGGRPDMFAAGARHVAHIDIDEAEINKVKRAHWSHIGDARQ
ALRALMEHESVALSSALWIGWVTELRQRHGMNYDRSNPLIQPQRVIEKLSEITGGRAIIS
TGVGQHQMWTAQFYQFTEPRSFLTSGSMGTMGFGLPAAIGAQLARPDALVIDIDGDGSIR
MNAGELETASTYGVPVKVLLLNNRGDGMIRQWQRLFYEGRTFVSDKALHRKDFVMAARAD
GFEFACRVETPSELDEKLKAFVAFEGPAFLEVMIDQNADVFPMVGPGQSYSNMITGPFIA
SRSETVAGEEGAVRLQAADMF