PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00567 (469 amino acids)

SeqID: H281DRAFT_00567 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 115305759: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00567
MTTSVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSTSESVDAIL
EGMEWLGLDFDEGPYYQMQRMDRYREVLKQMQDAGLVYPCYMSTEELDALRERQREAGEK
PRYDGTWRPEPGKVLPEPPAGVQPVLRFRNPLTGVVAWDDAVKGRIEISNEELDDLVIAR
PDGTPTYNFCVVVDDLDMRITHVIRGDDHVNNTPRQINILRALGGETPVYAHLPTVLNEQ
GEKMSKRHGAMSVMGYRDAGYLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKS
PAQYDHDKLNWLNAHYIKEADNGRLAGLARPFLAELGIDEATIAQGADLTAVVGLLKDRA
STVKEIAENAAMFYRTPAPDADALAQHVTDAVRPALADLAAALKTVEWTKEAIAAALKTT
LGTHKLKMPQLAMPVRLLVAGTTHTPSIDMVLMLFGRDVVVGRIEKALA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory