PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00975 (553 amino acids)

SeqID: H281DRAFT_00975 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114919: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00975
MNYDYIIVGAGSAGCILANRLSASGEYSVLLLEAGGKDSSFWFKVPVGFTKTYYNETYNW
MYYSEPEKELDNRPIYCPRGKVQGGSGSINAMIYVRGQPHDFDDWAAAGNPGWAFRDVLP
YFRKLESHPLGDTEYHGADGPIRISPMKDAVHPICHVFLKGCDQAGYRRSDDFNGAQFEG
AGIYDVNTRNGQRSSSSFEYLHPALARKNLTVEHNVLANRVLFEGKHRAIGVSVTQNGVA
RRFMAKREVILAAGAVDSPKLLQLSGLGDSALLAKHGITTIKELPAVGQNLQDHLCVSFY
YRANVKTLNDELRPLIGKLKLGLQYLLTRKGPLAMSVNQSGGFFRGSEREAQPNLQLYFN
PLSYRIPKSNKASLEPEPYSGFLLAFNPCRPTSRGSIEIASNRAEDAAKIRLNALTTQKD
IDEVIQGCELVRKVMASPALKEITVEEISPGPQVASRESFLQYFREQSGSIYHLCGSCAM
GNDPRTSVVDARLRVHGVAGLRVVDASVFPNITSGNINAPTMMVAEKGADMILEDAAAHA
AHEPYVAEFATAA