PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00987 (429 amino acids)

SeqID: H281DRAFT_00987 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141694: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00987
MTPNLTFAPDSMVHPGTFGADDVSAAAKPVAISGTDILTVKNLSKIFGPRPERAAELIRQ
GLGRNEIFEQTGNMVAVNDVSLSVKAGEIFVVMGLSGSGKSTLVRLLNRLIEPTSGQVIL
EGRDIAPMSTPELRDVRRKKMAMVFQSFALLPNRTVLDNIAYGLEVAGLKKAERYDIARA
ALTRVGLGSYEKLLPGELSGGMQQRVGLARALAVNPSVLLMDEAFSALDPLIRFEMQSEL
LRLQKEEQRTIVFISHDIEEAIKIGGRIGIMKDGCLIQVGTPAELIQSPADDYVRDFFRN
VDVSRFLKASSLMTRVERELISCDVAAPSERYLNQLIDSGADCGYVCDEAGRYQGCVTPA
SLRKTGAHSIREAFVNDVNAVPLDADLHQLATIALNQQHDVPVTDTAGRLAGIVSCRAIL
KQVMERRAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory