PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01118 (337 amino acids)

SeqID: H281DRAFT_01118 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16132198: 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01118
MPDPSFSPSSSVVALRGGPLVHPVRNPGMPFDASWLDGLRINQSAVERRTATLATRRTVK
KDAQAAWLLKAVTCIDLTTLSGDDTEGRVRRLCAKARQPVRADLLEALGMTPQRVTTGAV
CVYHRFVAAAVDALKGSGIPVAAVSTGFPAGLIPHPLKLKEIEASVADGAAEIDIVVTRE
YVLTGNWQALYDEVREFRAACGPAHLKAILATGDIRTLSNIARASMVCMMAGADFIKTST
GKEGVNATLDVSLVMVRMIREYHERTGVPIGFKPAGGVSSAKSVLSYQILMKEELGRAWL
EPELFRIGASSLLADIERQLEHHVSGRYSAFNRHPVA