PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01194 (383 amino acids)

SeqID: H281DRAFT_01194 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    Cytoplasmic            0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01194
MQFHRTVISSAIVMGLALAGAPCSYAATPVDVKIGFAAPLTGGQAHYGADFRSGVQLAIE
DMNGTNPVIGGKPVHFVLDAQDDQADPRTGTTVAQKLVDDGVVAVIGHYNSGTSIPAAPI
YAKAGTPQVAMATAPSYTRLGLPTTFRLLTSDTQLGAVLGDFAVKGLKFKRLAIVDDRTA
YGQGVAEEFAKAAKAAGATVVTEEYTNDKAVDFRAILTKIKQANVDAVFYGGADTQAAPM
LKQMRSLAIKSTLLGPDMLQSDNLIKIAGEASEGTLAASEGSPLSQMPGGKAFAERYQKR
FNQPVELYAPYAYDGTMAVFNAMKKADSTDPHVFLSALKATNMKGVTTSELSYDQYGDLK
YGGVTVYKVVNGTWKPLQTVGTK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory